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Getting Started

  • Installation
  • Clock glossary

Tutorials

  • Search, cite, get metadata and clock parameters
  • Illumina Human Methylation Arrays
  • The best DNAm mortality predictor: CpGPTGrimAge3
  • Illumina Mammalian Methylation Arrays
  • RRBS DNA methylation
  • Bulk histone mark ChIP-Seq
  • Bulk ATAC-Seq
  • Bulk RNA-Seq
  • Blood chemistry

API Reference

  • pyaging package
    • Data
    • Preprocess
    • Predict
    • Utils
    • Models

Clock implementation

  • Clock implementation
    • ABEC
    • AltumAge
    • BiTAge
    • cABEC
    • CamilloH3K27ac
    • CamilloH3K27me3
    • CamilloH3K36me3
    • CamilloH3K4me1
    • CamilloH3K4me3
    • CamilloH3K9ac
    • CamilloH3K9me3
    • CamilloPanHistone
    • CpGPTGrimAge3
    • CpGPTPCGrimAge3
    • DeconvoluteBloodEPIC
    • DeconvoluteBloodEPIC
    • DeconvoluteBloodEPIC
    • DeconvoluteBloodEPIC
    • DeconvoluteBloodEPIC
    • DeconvoluteBloodEPIC
    • DNAmFitAge
    • DNAmFitAgeGaitF
    • DNAmFitAgeGaitM
    • DNAmFitAgeGripF
    • DNAmFitAgeGripM
    • DNAmFitAgeVO2Max
    • DNAmPhenoAge
    • DNAmIC
    • DNAmTL
    • DunedinPACE
    • eABEC
    • ENCen100
    • ENCen40
    • epiTOC1
    • epiTOC2
    • EnsembleAgeStatic
    • EnsembleAgeStaticTop
    • GrimAge
    • GrimAge2
    • GrimAge2ADM
    • GrimAge2B2M
    • GrimAge2CystatinC
    • GrimAge2GDF15
    • GrimAge2Leptin
    • GrimAge2LogA1C
    • GrimAge2LogCRP
    • GrimAge2PackYrs
    • GrimAge2PAI1
    • GrimAge2TIMP1
    • Han
    • Hannum
    • Horvath2013
    • HypoClock
    • HRSInCHPhenoAge
    • IntrinClock
    • Knight
    • LeeControl
    • LeeRefinedRobust
    • LeeRobust
    • Lin
    • Mammalian1
    • Mammalian2
    • Mammalian3
    • MammalianBlood2
    • MammalianBlood3
    • MammalianFemale
    • MammalianLifespan
    • MammalianSkin2
    • MammalianSkin3
    • McCartneyBMI
    • McCartneyBodyFat
    • McCartneyEducation
    • McCartneyHDLCholesterol
    • McCartneyLDLCholesterol
    • SmokingMcCartney
    • McCartneyTotalCholesterol
    • Meer
    • OcampoATAC1
    • OcampoATAC2
    • Pasta
    • PCDNAmTL
    • PCGrimAge
    • PCHannum
    • PCHorvath2013
    • PCPhenoAge
    • PCSkinAndBlood
    • PedBE
    • Petkovich
    • PhenoAge
    • PipekElasticNet
    • PipekFilteredH
    • PipekRetrainedH
    • Reg
    • RepliTali
    • RetroelementAgeV1
    • RetroelementAgeV2
    • SkinAndBlood
    • stemTOC
    • StocH
    • StocP
    • StocZ
    • Stubbs
    • SystemsAge
    • SystemsAgeBlood
    • SystemsAgeBrain
    • SystemsAgeHeart
    • SystemsAgeHormone
    • SystemsAgeImmune
    • SystemsAgeInflammation
    • SystemsAgeKidney
    • SystemsAgeLiver
    • SystemsAgeLung
    • SystemsAgeMetabolic
    • SystemsAgeMusculoSkeletal
    • Thompson
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • TwelveCellDeconvoluteBloodEPIC
    • XChrom
    • YChrom
    • YingAdaptAge
    • YingCausAge
    • YingDamAge
    • ZhangBLUP
    • ZhangEN
    • ZhangMortality
    • Template

Python Module Index

p
 
p
- pyaging
    pyaging.data._data
    pyaging.models._models
    pyaging.predict._postprocessing
    pyaging.predict._pred
    pyaging.predict._pred_utils
    pyaging.predict._preprocessing
    pyaging.preprocess._preprocess
    pyaging.preprocess._preprocess_utils
    pyaging.utils._utils

By Lucas Paulo de Lima Camillo

© Copyright 2023, Lucas Paulo de Lima Camillo.