Clock implementation
====================

The following collection of Jupyter Notebooks provides a comprehensive guide to the implementation of various biological clocks. Each notebook is dedicated to a specific analysis.

.. toctree::
   :maxdepth: 1

   clock_notebooks/abec
   clock_notebooks/altumage
   clock_notebooks/bitage
   clock_notebooks/cabec
   clock_notebooks/camilloh3k27ac
   clock_notebooks/camilloh3k27me3
   clock_notebooks/camilloh3k36me3
   clock_notebooks/camilloh3k4me1
   clock_notebooks/camilloh3k4me3
   clock_notebooks/camilloh3k9ac
   clock_notebooks/camilloh3k9me3
   clock_notebooks/camillopanhistone
   clock_notebooks/cpgptgrimage3
   clock_notebooks/cpgptpcgrimage3
   clock_notebooks/deconvolutebloodepicbcell
   clock_notebooks/deconvolutebloodepiccd4tcell
   clock_notebooks/deconvolutebloodepiccd8tcell
   clock_notebooks/deconvolutebloodepicmonocyte
   clock_notebooks/deconvolutebloodepicneutrophil
   clock_notebooks/deconvolutebloodepicnkcell
   clock_notebooks/dnamfitage
   clock_notebooks/dnamfitagegaitf
   clock_notebooks/dnamfitagegaitm
   clock_notebooks/dnamfitagegripf
   clock_notebooks/dnamfitagegripm
   clock_notebooks/dnamfitagevo2max
   clock_notebooks/dnamphenoage
   clock_notebooks/dnamic
   clock_notebooks/dnamtl
   clock_notebooks/dunedinpace
   clock_notebooks/eabec
   clock_notebooks/encen100
   clock_notebooks/encen40
   clock_notebooks/epitoc1
   clock_notebooks/epitoc2
   clock_notebooks/ensembleagestatic
   clock_notebooks/ensembleagestatictop
   clock_notebooks/grimage
   clock_notebooks/grimage2
   clock_notebooks/grimage2adm
   clock_notebooks/grimage2b2m
   clock_notebooks/grimage2cystatinc
   clock_notebooks/grimage2gdf15
   clock_notebooks/grimage2leptin
   clock_notebooks/grimage2loga1c
   clock_notebooks/grimage2logcrp
   clock_notebooks/grimage2packyrs
   clock_notebooks/grimage2pai1
   clock_notebooks/grimage2timp1
   clock_notebooks/han
   clock_notebooks/hannum
   clock_notebooks/horvath2013
   clock_notebooks/hypoclock
   clock_notebooks/hrsinchphenoage
   clock_notebooks/intrinclock
   clock_notebooks/knight
   clock_notebooks/leecontrol
   clock_notebooks/leerefinedrobust
   clock_notebooks/leerobust
   clock_notebooks/lin
   clock_notebooks/mammalian1
   clock_notebooks/mammalian2
   clock_notebooks/mammalian3
   clock_notebooks/mammalianblood2
   clock_notebooks/mammalianblood3
   clock_notebooks/mammalianfemale
   clock_notebooks/mammalianlifespan
   clock_notebooks/mammalianskin2
   clock_notebooks/mammalianskin3
   clock_notebooks/mccartneybmi
   clock_notebooks/mccartneybodyfat
   clock_notebooks/mccartneyeducation
   clock_notebooks/mccartneyhdlcholesterol
   clock_notebooks/mccartneyldlcholesterol
   clock_notebooks/mccartneysmoking
   clock_notebooks/mccartneytotalcholesterol
   clock_notebooks/meer
   clock_notebooks/ocampoatac1
   clock_notebooks/ocampoatac2
   clock_notebooks/pasta
   clock_notebooks/pasta_mouse
   clock_notebooks/pcdnamtl
   clock_notebooks/pcgrimage
   clock_notebooks/pchannum
   clock_notebooks/pchorvath2013
   clock_notebooks/pcphenoage
   clock_notebooks/pcskinandblood
   clock_notebooks/pedbe
   clock_notebooks/petkovich
   clock_notebooks/phenoage
   clock_notebooks/pipekelasticnet
   clock_notebooks/pipekfilteredh
   clock_notebooks/pipekretrainedh
   clock_notebooks/reg
   clock_notebooks/replitali
   clock_notebooks/retroelementagev1
   clock_notebooks/retroelementagev2
   clock_notebooks/skinandblood
   clock_notebooks/stemtoc
   clock_notebooks/stoch
   clock_notebooks/stocp
   clock_notebooks/stocz
   clock_notebooks/stubbs
   clock_notebooks/systemsage
   clock_notebooks/systemsageblood
   clock_notebooks/systemsagebrain
   clock_notebooks/systemsageheart
   clock_notebooks/systemsagehormone
   clock_notebooks/systemsageimmune
   clock_notebooks/systemsageinflammation
   clock_notebooks/systemsagekidney
   clock_notebooks/systemsageliver
   clock_notebooks/systemsagelung
   clock_notebooks/systemsagemetabolic
   clock_notebooks/systemsagemusculoskeletal
   clock_notebooks/thompson
   clock_notebooks/twelvecelldeconvolutebloodepicbas
   clock_notebooks/twelvecelldeconvolutebloodepicbmem
   clock_notebooks/twelvecelldeconvolutebloodepicbnv
   clock_notebooks/twelvecelldeconvolutebloodepiccd4mem
   clock_notebooks/twelvecelldeconvolutebloodepiccd4nv
   clock_notebooks/twelvecelldeconvolutebloodepiccd8mem
   clock_notebooks/twelvecelldeconvolutebloodepiccd8nv
   clock_notebooks/twelvecelldeconvolutebloodepiceos
   clock_notebooks/twelvecelldeconvolutebloodepicmono
   clock_notebooks/twelvecelldeconvolutebloodepicneu
   clock_notebooks/twelvecelldeconvolutebloodepicnk
   clock_notebooks/twelvecelldeconvolutebloodepictreg
   clock_notebooks/xchrom
   clock_notebooks/ychrom
   clock_notebooks/yingadaptage
   clock_notebooks/yingcausage
   clock_notebooks/yingdamage
   clock_notebooks/zhangblup
   clock_notebooks/zhangen
   clock_notebooks/zhangmortality
   clock_notebooks/template