Index A | B | C | D | E | F | G | H | I | K | L | M | O | P | Q | R | S | T | X | Y | Z A ABEC (class in pyaging.models._models) add_metadata_to_anndata() (in module pyaging.preprocess._preprocess_utils) add_pred_ages_and_clock_metadata_adata() (in module pyaging.predict._pred_utils) add_unstructured_data() (in module pyaging.preprocess._preprocess_utils) AltumAge (class in pyaging.models._models) anti_log() (in module pyaging.predict._postprocessing) anti_log_linear() (in module pyaging.predict._postprocessing) anti_log_log() (in module pyaging.predict._postprocessing) anti_logp2() (in module pyaging.predict._postprocessing) B bigwig_to_df() (in module pyaging.preprocess._preprocess) binarize() (in module pyaging.predict._preprocessing) BiTAge (class in pyaging.models._models) C cABEC (class in pyaging.models._models) CamilloH3K27ac (class in pyaging.models._models) CamilloH3K27me3 (class in pyaging.models._models) CamilloH3K36me3 (class in pyaging.models._models) CamilloH3K4me1 (class in pyaging.models._models) CamilloH3K4me3 (class in pyaging.models._models) CamilloH3K9ac (class in pyaging.models._models) CamilloH3K9me3 (class in pyaging.models._models) CamilloPanHistone (class in pyaging.models._models) check_features_in_adata() (in module pyaging.predict._pred_utils) cite_clock() (in module pyaging.utils._utils) cleanup_clock_memory() (in module pyaging.predict._pred_utils) CpGPTGrimAge3 (class in pyaging.models._models) CpGPTPCGrimAge3 (class in pyaging.models._models) create_anndata_object() (in module pyaging.preprocess._preprocess_utils) D DeconvoluteBloodEPIC (class in pyaging.models._models) DeconvolutionSingleCell (class in pyaging.models._models) DepressionBarbu (class in pyaging.models._models) df_to_adata() (in module pyaging.preprocess._preprocess) DNAmFitAge (class in pyaging.models._models) DNAmFitAgeGaitF (class in pyaging.models._models) DNAmFitAgeGaitM (class in pyaging.models._models) DNAmFitAgeGripF (class in pyaging.models._models) DNAmFitAgeGripM (class in pyaging.models._models) DNAmFitAgeVO2Max (class in pyaging.models._models) DNAmIC (class in pyaging.models._models) DNAmPhenoAge (class in pyaging.models._models) DNAmTL (class in pyaging.models._models) download() (in module pyaging.utils._utils) download_example_data() (in module pyaging.data._data) DunedinPACE (class in pyaging.models._models) E eABEC (class in pyaging.models._models) ENCen100 (class in pyaging.models._models) ENCen40 (class in pyaging.models._models) EnsembleAgeStatic (class in pyaging.models._models) EnsembleAgeStaticTop (class in pyaging.models._models) epicv2_probe_aggregation() (in module pyaging.preprocess._preprocess) epiTOC1 (class in pyaging.models._models) epiTOC2 (class in pyaging.models._models) F find_clock_by_doi() (in module pyaging.utils._utils) forward() (pyaging.models._models.CpGPTPCGrimAge3 method) (pyaging.models._models.DeconvolutionSingleCell method) (pyaging.models._models.DNAmFitAge method) (pyaging.models._models.epiTOC2 method) (pyaging.models._models.GrimAge method) (pyaging.models._models.GrimAge2 method) (pyaging.models._models.Mammalian2 method) (pyaging.models._models.Mammalian3 method) (pyaging.models._models.MammalianBlood2 method) (pyaging.models._models.MammalianBlood3 method) (pyaging.models._models.MammalianSkin2 method) (pyaging.models._models.MammalianSkin3 method) (pyaging.models._models.PastaMouse method) (pyaging.models._models.PCGrimAge method) (pyaging.models._models.SystemsAgeBase method) (pyaging.models._models.XChrom method) (pyaging.models._models.YChrom method) G get_clock_metadata() (in module pyaging.utils._utils) GrimAge (class in pyaging.models._models) GrimAge2 (class in pyaging.models._models) GrimAge2ADM (class in pyaging.models._models) GrimAge2B2M (class in pyaging.models._models) GrimAge2CystatinC (class in pyaging.models._models) GrimAge2GDF15 (class in pyaging.models._models) GrimAge2Leptin (class in pyaging.models._models) GrimAge2LogA1C (class in pyaging.models._models) GrimAge2LogCRP (class in pyaging.models._models) GrimAge2PackYrs (class in pyaging.models._models) GrimAge2PAI1 (class in pyaging.models._models) GrimAge2TIMP1 (class in pyaging.models._models) H Han (class in pyaging.models._models) Hannum (class in pyaging.models._models) Horvath2013 (class in pyaging.models._models) HRSInCHPhenoAge (class in pyaging.models._models) HypoClock (class in pyaging.models._models) I impute_missing_values() (in module pyaging.preprocess._preprocess_utils) IntrinClock (class in pyaging.models._models) is_newer_than_target() (in module pyaging.utils._utils) K Knight (class in pyaging.models._models) L LeeControl (class in pyaging.models._models) LeeRefinedRobust (class in pyaging.models._models) LeeRobust (class in pyaging.models._models) Lin (class in pyaging.models._models) load_clock() (in module pyaging.predict._pred_utils) load_clock_metadata() (in module pyaging.utils._utils) load_ensembl_metadata() (in module pyaging.preprocess._preprocess_utils) log_data_statistics() (in module pyaging.preprocess._preprocess_utils) M Mammalian1 (class in pyaging.models._models) Mammalian2 (class in pyaging.models._models) Mammalian3 (class in pyaging.models._models) MammalianBlood2 (class in pyaging.models._models) MammalianBlood3 (class in pyaging.models._models) MammalianFemale (class in pyaging.models._models) MammalianLifespan (class in pyaging.models._models) MammalianSkin2 (class in pyaging.models._models) MammalianSkin3 (class in pyaging.models._models) McCartneyBMI (class in pyaging.models._models) McCartneyBodyFat (class in pyaging.models._models) McCartneyEducation (class in pyaging.models._models) McCartneyHDLCholesterol (class in pyaging.models._models) McCartneyLDLCholesterol (class in pyaging.models._models) McCartneySmoking (class in pyaging.models._models) McCartneyTotalCholesterol (class in pyaging.models._models) Meer (class in pyaging.models._models) module pyaging.data._data pyaging.models._models pyaging.predict._postprocessing pyaging.predict._pred pyaging.predict._pred_utils pyaging.predict._preprocessing pyaging.preprocess._preprocess pyaging.preprocess._preprocess_utils pyaging.utils._utils mortality_to_phenoage() (in module pyaging.predict._postprocessing) O OcampoATAC1 (class in pyaging.models._models) OcampoATAC2 (class in pyaging.models._models) P Pasta (class in pyaging.models._models) PastaMouse (class in pyaging.models._models) PCDNAmTL (class in pyaging.models._models) PCGrimAge (class in pyaging.models._models) PCHannum (class in pyaging.models._models) PCHorvath2013 (class in pyaging.models._models) PCPhenoAge (class in pyaging.models._models) PCSkinAndBlood (class in pyaging.models._models) PedBE (class in pyaging.models._models) Petkovich (class in pyaging.models._models) petkovichblood() (in module pyaging.predict._postprocessing) PhenoAge (class in pyaging.models._models) PipekElasticNet (class in pyaging.models._models) PipekFilteredH (class in pyaging.models._models) PipekRetrainedH (class in pyaging.models._models) postprocess() (pyaging.models._models.ABEC method) (pyaging.models._models.AltumAge method) (pyaging.models._models.BiTAge method) (pyaging.models._models.cABEC method) (pyaging.models._models.CamilloH3K27ac method) (pyaging.models._models.CamilloH3K27me3 method) (pyaging.models._models.CamilloH3K36me3 method) (pyaging.models._models.CamilloH3K4me1 method) (pyaging.models._models.CamilloH3K4me3 method) (pyaging.models._models.CamilloH3K9ac method) (pyaging.models._models.CamilloH3K9me3 method) (pyaging.models._models.CamilloPanHistone method) (pyaging.models._models.CpGPTGrimAge3 method) (pyaging.models._models.CpGPTPCGrimAge3 method) (pyaging.models._models.DeconvolutionSingleCell method) (pyaging.models._models.DepressionBarbu method) (pyaging.models._models.DNAmFitAge method) (pyaging.models._models.DNAmFitAgeGaitF method) (pyaging.models._models.DNAmFitAgeGaitM method) (pyaging.models._models.DNAmFitAgeGripF method) (pyaging.models._models.DNAmFitAgeGripM method) (pyaging.models._models.DNAmFitAgeVO2Max method) (pyaging.models._models.DNAmIC method) (pyaging.models._models.DNAmPhenoAge method) (pyaging.models._models.DNAmTL method) (pyaging.models._models.DunedinPACE method) (pyaging.models._models.eABEC method) (pyaging.models._models.ENCen100 method) (pyaging.models._models.ENCen40 method) (pyaging.models._models.EnsembleAgeStatic method) (pyaging.models._models.EnsembleAgeStaticTop method) (pyaging.models._models.epiTOC1 method) (pyaging.models._models.epiTOC2 method) (pyaging.models._models.GrimAge method) (pyaging.models._models.GrimAge2 method) (pyaging.models._models.GrimAge2ADM method) (pyaging.models._models.GrimAge2B2M method) (pyaging.models._models.GrimAge2CystatinC method) (pyaging.models._models.GrimAge2GDF15 method) (pyaging.models._models.GrimAge2Leptin method) (pyaging.models._models.GrimAge2LogA1C method) (pyaging.models._models.GrimAge2LogCRP method) (pyaging.models._models.GrimAge2PackYrs method) (pyaging.models._models.GrimAge2PAI1 method) (pyaging.models._models.GrimAge2TIMP1 method) (pyaging.models._models.Han method) (pyaging.models._models.Hannum method) (pyaging.models._models.Horvath2013 method) (pyaging.models._models.HRSInCHPhenoAge method) (pyaging.models._models.HypoClock method) (pyaging.models._models.IntrinClock method) (pyaging.models._models.Knight method) (pyaging.models._models.LeeControl method) (pyaging.models._models.LeeRefinedRobust method) (pyaging.models._models.LeeRobust method) (pyaging.models._models.Lin method) (pyaging.models._models.Mammalian1 method) (pyaging.models._models.Mammalian2 method) (pyaging.models._models.Mammalian3 method) (pyaging.models._models.MammalianBlood2 method) (pyaging.models._models.MammalianBlood3 method) (pyaging.models._models.MammalianFemale method) (pyaging.models._models.MammalianLifespan method) (pyaging.models._models.MammalianSkin2 method) (pyaging.models._models.MammalianSkin3 method) (pyaging.models._models.McCartneyBMI method) (pyaging.models._models.McCartneyBodyFat method) (pyaging.models._models.McCartneyEducation method) (pyaging.models._models.McCartneyHDLCholesterol method) (pyaging.models._models.McCartneyLDLCholesterol method) (pyaging.models._models.McCartneySmoking method) (pyaging.models._models.McCartneyTotalCholesterol method) (pyaging.models._models.Meer method) (pyaging.models._models.OcampoATAC1 method) (pyaging.models._models.OcampoATAC2 method) (pyaging.models._models.Pasta method) (pyaging.models._models.PCDNAmTL method) (pyaging.models._models.PCGrimAge method) (pyaging.models._models.PCHannum method) (pyaging.models._models.PCHorvath2013 method) (pyaging.models._models.PCPhenoAge method) (pyaging.models._models.PCSkinAndBlood method) (pyaging.models._models.PedBE method) (pyaging.models._models.Petkovich method) (pyaging.models._models.PhenoAge method) (pyaging.models._models.PipekElasticNet method) (pyaging.models._models.PipekFilteredH method) (pyaging.models._models.PipekRetrainedH method) (pyaging.models._models.Reg method) (pyaging.models._models.RepliTali method) (pyaging.models._models.RetroelementAgeV1 method) (pyaging.models._models.RetroelementAgeV2 method) (pyaging.models._models.SexScoreBase method) (pyaging.models._models.SkinAndBlood method) (pyaging.models._models.stemTOC method) (pyaging.models._models.StocH method) (pyaging.models._models.StocP method) (pyaging.models._models.StocZ method) (pyaging.models._models.Stubbs method) (pyaging.models._models.SystemsAgeBase method) (pyaging.models._models.Thompson method) (pyaging.models._models.YingAdaptAge method) (pyaging.models._models.YingCausAge method) (pyaging.models._models.YingDamAge method) (pyaging.models._models.ZhangBLUP method) (pyaging.models._models.ZhangEN method) (pyaging.models._models.ZhangMortality method) predict_age() (in module pyaging.predict._pred) predict_ages_with_model() (in module pyaging.predict._pred_utils) preprocess() (pyaging.models._models.ABEC method) (pyaging.models._models.AltumAge method) (pyaging.models._models.BiTAge method) (pyaging.models._models.cABEC method) (pyaging.models._models.CamilloH3K27ac method) (pyaging.models._models.CamilloH3K27me3 method) (pyaging.models._models.CamilloH3K36me3 method) (pyaging.models._models.CamilloH3K4me1 method) (pyaging.models._models.CamilloH3K4me3 method) (pyaging.models._models.CamilloH3K9ac method) (pyaging.models._models.CamilloH3K9me3 method) (pyaging.models._models.CamilloPanHistone method) (pyaging.models._models.CpGPTGrimAge3 method) (pyaging.models._models.CpGPTPCGrimAge3 method) (pyaging.models._models.DeconvolutionSingleCell method) (pyaging.models._models.DepressionBarbu method) (pyaging.models._models.DNAmFitAge method) (pyaging.models._models.DNAmFitAgeGaitF method) (pyaging.models._models.DNAmFitAgeGaitM method) (pyaging.models._models.DNAmFitAgeGripF method) (pyaging.models._models.DNAmFitAgeGripM method) (pyaging.models._models.DNAmFitAgeVO2Max method) (pyaging.models._models.DNAmIC method) (pyaging.models._models.DNAmPhenoAge method) (pyaging.models._models.DNAmTL method) (pyaging.models._models.DunedinPACE method) (pyaging.models._models.eABEC method) (pyaging.models._models.ENCen100 method) (pyaging.models._models.ENCen40 method) (pyaging.models._models.EnsembleAgeStatic method) (pyaging.models._models.EnsembleAgeStaticTop method) (pyaging.models._models.epiTOC1 method) (pyaging.models._models.epiTOC2 method) (pyaging.models._models.GrimAge method) (pyaging.models._models.GrimAge2 method) (pyaging.models._models.GrimAge2ADM method) (pyaging.models._models.GrimAge2B2M method) (pyaging.models._models.GrimAge2CystatinC method) (pyaging.models._models.GrimAge2GDF15 method) (pyaging.models._models.GrimAge2Leptin method) (pyaging.models._models.GrimAge2LogA1C method) (pyaging.models._models.GrimAge2LogCRP method) (pyaging.models._models.GrimAge2PackYrs method) (pyaging.models._models.GrimAge2PAI1 method) (pyaging.models._models.GrimAge2TIMP1 method) (pyaging.models._models.Han method) (pyaging.models._models.Hannum method) (pyaging.models._models.Horvath2013 method) (pyaging.models._models.HRSInCHPhenoAge method) (pyaging.models._models.HypoClock method) (pyaging.models._models.IntrinClock method) (pyaging.models._models.Knight method) (pyaging.models._models.LeeControl method) (pyaging.models._models.LeeRefinedRobust method) (pyaging.models._models.LeeRobust method) (pyaging.models._models.Lin method) (pyaging.models._models.Mammalian1 method) (pyaging.models._models.Mammalian2 method) (pyaging.models._models.Mammalian3 method) (pyaging.models._models.MammalianBlood2 method) (pyaging.models._models.MammalianBlood3 method) (pyaging.models._models.MammalianFemale method) (pyaging.models._models.MammalianLifespan method) (pyaging.models._models.MammalianSkin2 method) (pyaging.models._models.MammalianSkin3 method) (pyaging.models._models.McCartneyBMI method) (pyaging.models._models.McCartneyBodyFat method) (pyaging.models._models.McCartneyEducation method) (pyaging.models._models.McCartneyHDLCholesterol method) (pyaging.models._models.McCartneyLDLCholesterol method) (pyaging.models._models.McCartneySmoking method) (pyaging.models._models.McCartneyTotalCholesterol method) (pyaging.models._models.Meer method) (pyaging.models._models.OcampoATAC1 method) (pyaging.models._models.OcampoATAC2 method) (pyaging.models._models.Pasta method) (pyaging.models._models.PCDNAmTL method) (pyaging.models._models.PCGrimAge method) (pyaging.models._models.PCHannum method) (pyaging.models._models.PCHorvath2013 method) (pyaging.models._models.PCPhenoAge method) (pyaging.models._models.PCSkinAndBlood method) (pyaging.models._models.PedBE method) (pyaging.models._models.Petkovich method) (pyaging.models._models.PhenoAge method) (pyaging.models._models.PipekElasticNet method) (pyaging.models._models.PipekFilteredH method) (pyaging.models._models.PipekRetrainedH method) (pyaging.models._models.Reg method) (pyaging.models._models.RepliTali method) (pyaging.models._models.RetroelementAgeV1 method) (pyaging.models._models.RetroelementAgeV2 method) (pyaging.models._models.SexScoreBase method) (pyaging.models._models.SkinAndBlood method) (pyaging.models._models.stemTOC method) (pyaging.models._models.StocH method) (pyaging.models._models.StocP method) (pyaging.models._models.StocZ method) (pyaging.models._models.Stubbs method) (pyaging.models._models.SystemsAgeBase method) (pyaging.models._models.Thompson method) (pyaging.models._models.YingAdaptAge method) (pyaging.models._models.YingCausAge method) (pyaging.models._models.YingDamAge method) (pyaging.models._models.ZhangBLUP method) (pyaging.models._models.ZhangEN method) (pyaging.models._models.ZhangMortality method) print_model_details() (in module pyaging.utils._utils) progress() (in module pyaging.utils._utils) pyaging.data._data module pyaging.models._models module pyaging.predict._postprocessing module pyaging.predict._pred module pyaging.predict._pred_utils module pyaging.predict._preprocessing module pyaging.preprocess._preprocess module pyaging.preprocess._preprocess_utils module pyaging.utils._utils module Q quantile_normalize_with_gold_standard() (in module pyaging.predict._preprocessing) R Reg (class in pyaging.models._models) RepliTali (class in pyaging.models._models) RetroelementAgeV1 (class in pyaging.models._models) RetroelementAgeV2 (class in pyaging.models._models) S scale() (in module pyaging.predict._preprocessing) scale_row() (in module pyaging.predict._preprocessing) scale_with_gold_standard() (in module pyaging.predict._preprocessing) set_mouse_features() (pyaging.models._models.PastaMouse method) set_torch_device() (in module pyaging.predict._pred_utils) SexScoreBase (class in pyaging.models._models) show_all_clocks() (in module pyaging.utils._utils) SkinAndBlood (class in pyaging.models._models) stemTOC (class in pyaging.models._models) StocH (class in pyaging.models._models) StocP (class in pyaging.models._models) StocZ (class in pyaging.models._models) Stubbs (class in pyaging.models._models) stubbsmultitissue() (in module pyaging.predict._postprocessing) SystemsAge (class in pyaging.models._models) SystemsAgeBase (class in pyaging.models._models) SystemsAgeBlood (class in pyaging.models._models) SystemsAgeBrain (class in pyaging.models._models) SystemsAgeHeart (class in pyaging.models._models) SystemsAgeHormone (class in pyaging.models._models) SystemsAgeImmune (class in pyaging.models._models) SystemsAgeInflammation (class in pyaging.models._models) SystemsAgeKidney (class in pyaging.models._models) SystemsAgeLiver (class in pyaging.models._models) SystemsAgeLung (class in pyaging.models._models) SystemsAgeMetabolic (class in pyaging.models._models) SystemsAgeMusculoSkeletal (class in pyaging.models._models) T Thompson (class in pyaging.models._models) tpm_norm_log1p() (in module pyaging.predict._preprocessing) TwelveCellDeconvoluteBloodEPIC (class in pyaging.models._models) X XChrom (class in pyaging.models._models) Y YChrom (class in pyaging.models._models) YingAdaptAge (class in pyaging.models._models) YingCausAge (class in pyaging.models._models) YingDamAge (class in pyaging.models._models) Z ZhangBLUP (class in pyaging.models._models) ZhangEN (class in pyaging.models._models) ZhangMortality (class in pyaging.models._models)
