Welcome to the Documentation for pyaging

pyaging is a Python package designed for biological aging clocks analysis, leveraging a GPU-optimized PyTorch backend. pyaging aims to be a comprehensive toolkit for researchers and scientists in the field of aging.

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Contents

Getting Started

• Installation
• Clock glossary

Tutorials

• Search, cite, get metadata and clock parameters
• Illumina Human Methylation Arrays
• Illumina Mammalian Methylation Arrays
• RRBS DNA methylation
• Bulk histone mark ChIP-Seq
• Bulk ATAC-Seq
• Bulk RNA-Seq
• Blood chemistry

API Reference

• pyaging package

Clock implementation

• Clock implementation

Additional Resources

• FAQ
• References

Indices and Tables

• Index

• Module Index

• Search Page